James Davis

 

James Davis, MD     

James Davis, MD, Assistant Professor

Department of Pathology
Medical Director, Stony Brook BioBank
HSC L2, Room 706
Stony Brook, NY 11794
Phone: (631) 444-3360
Email: James.Davis@stonybrookmedicine.edu

INTERESTS

Anatomic pathology, neuropathology, pediatric pathology, biobanking, and tissue-based research infrastructure supporting precision medicine and computational pathology.
 
BIOGRAPHY
 
Dr. James Davis received his MD from the Columbia University College of Physicians and Surgeons and completed his residency in pathology at Massachusetts General Hospital. He completed fellowship training in Neuropathology at Brigham and Women’s Hospital and in Pediatric Pathology at Boston Children’s Hospital. At Stony Brook, he practices as an anatomic pathologist and neuropathologist, serves as Chief of Pediatric Pathology, and is a member of the Stony Brook University Hospital cancer committee.
 
RESEARCH
 
As Medical Director of the Stony Brook BioBank, Dr. Davis oversees the collection, annotation, and stewardship of human biospecimens that support translational research across the university, including tissue resources used in computational pathology and machine learning collaborations with the Department of Biomedical Informatics. His scholarly work spans patient-derived organoid models, tumor biomarkers, neuropathology, and pediatric pathology case studies.
 
SELECTED PUBLICATIONS

Full list: ORCID   

  1. Zirun Zhao, Rachel C. Kim, Felix Tavernier, Rachana Choksi, Trevor Van Brunt, James E. Davis, Katharine Kevill, Helen Hsieh. A Young Child With Recurrent Pneumonia and Hemoptysis During the COVID-19 Pandemic. Chest, 162(2):e77-e80, 2022.
  2. Brooke N. Learned, Wazhma Nasiri-Ahad, James E. Davis, Alpa G. Desai, Alan K. Chang. Rare Association between Sarcoidosis and Smoldering Multiple Myeloma: A Case Report. Cancer investigation, 39(10):880-884, 2021.
  3. Jerry A. Rubano, Patrick T. Jasinski, Daniel N. Rutigliano, Apostolos K. Tassiopoulos, James E. Davis, Tazeen Beg, Shaji Poovathoor, Sergio D. Bergese, Sahar Ahmad, et al. Tracheobronchial Slough, a Potential Pathology in Endotracheal Tube Obstruction in Patients With Coronavirus Disease 2019 (COVID-19) in the Intensive Care Setting. Annals of surgery, 272(2):e63-e65, 2020.
  4. Mei Gao, Miranda Lin, Manisha Rao, Hannah Thompson, Kelsi Hirai, Minsig Choi, Georgios Georgakis, Aaron R. Sasson, Juan Carlos Bucobo, James E. Davis, et al. Development of Patient-Derived Gastric Cancer Organoids from Endoscopic Biopsies and Surgical Tissues. Annals of Surgical Oncology, 25(9):2767-2775, 2018.
  5. David R. Busch, James E. Davis, Angela Sofia Kogler, Robert M. Galler, Ashwin B. Parthasarathy, Arjun G. Yodh, Thomas F. Floyd. Laser safety in fiber-optic monitoring of spinal cord hemodynamics: a preclinical evaluation. Journal of Biomedical Optics, 23(06):1, 2018.
  6. Richard R. Kew, Tahmineh Tabrizian, James A. Vosswinkel, James E. Davis, Randeep S. Jawa. Vitamin D-binding protein deficiency in mice decreases systemic and select tissue levels of inflammatory cytokines in a murine model of acute muscle injury. The journal of trauma and acute care surgery, 84(6):847-854, 2018.
  7. Le Hou, Dimitris Samaras, Tahsin M. Kurc, Yi Gao, James E. Davis, Joel H. Saltz. Patch-based Convolutional Neural Network for Whole Slide Tissue Image Classification. Proceedings. IEEE Computer Society Conference on Computer Vision and Pattern Recognition, 2016:2424-2433, 2016.
  8. Felix Cheung, Varun R. Talanki, Jingxuan Liu, James E. Davis, Wayne C. Waltzer, Anthony T. Corcoran. Metachronous Malignant Solitary Fibrous Tumor of Kidney: Case Report and Review of Literature. Urology case reports, 4:45-7, 2016.
  9. Alexander Barash, Patrick A. Sibony, Nigel A. Stippa, Nariman S. Boyle, James E. Davis. Optic Nerve Sheath Melanoma Presenting as a Central Retinal Vein Occlusion. Journal of Neuro-Ophthalmology, 36(1):70-72, 2015.
  10. James E. Davis, Barbara Nemesure, Saira Mehmood, Vipul Nayi, Stephanie Burke, Sabrina Brzostek, Meenakshi Singh. Her2 and Ki67 Biomarkers Predict Recurrence of Ductal Carcinoma in Situ. Applied immunohistochemistry & molecular morphology, 24(1):20-25, 2015.
  11. Varvara Kirillov, Jonathan Siler, Mahalakshmi Ramadass, Lingyin Ge, James E. Davis, Geraldine M. Grant, Steven D. Nathan, Gábor Járai, Glenda Trujillo. Sustained Activation of Toll-Like Receptor 9 Induces an Invasive Phenotype in Lung Fibroblasts. American Journal Of Pathology, 185(4):943-957, 2015.
  12. Hugh J. McMillan, Jayashri Srinivasan, Basil T. Darras, Monique M. Ryan, James E. Davis, Hart G.W. Lidov, Deepak Gill, H. Royden Jones. Pediatric sciatic neuropathy associated with neoplasms. Muscle & Nerve, 43(2):183-188, 2011.